Nygen Intel provides intelligence ready datasets and large scale atlases pre-annotated by CyteType
designed for disovery

Nygen Intel

Your next drug target is already discovered.

Our AI bioinformatician analyzes thousands of public single-cell datasets. The novel targets are waiting for you to claim.

The Gap in Target Discovery

Thousands of single-cell datasets in public repositories contain undiscovered drug targets. Traditional analysis takes months and costs on average - $50K+ per study. Standard pipelines miss ~70% of novel cell states needed for biomarker validation.

Designed for Biomarker Discovery teams

Scientists running target discovery and biomarker validation need validated cellular data without months of annotation overhead. Nygen Intel provides resolution your standard pipeline can't reach.

Nygen Analytics

single-cell RNA-seq data analysis with Nygen
Designed for the bench scientist. Spend less time wrestling with data and more time making discoveries.
Streamline your research with intuitive and collaborative single-cell omics analysis.
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5.0
Join 1500+ researchers
analyzing with Nygen
single-cell RNA-seq data analysis with Nygen
Pre-analysed intelligence for biomarker validation and target identification in drug discovery using public single cell RNA-seq datasets and atlases

Pre-Analyzed Data for Drug Discovery

Nygen Intel delivers annotated single-cell atlases for target discovery, biomarker validation, and translational research. CyteType, our multi-agentic platform, processes public datasets at 300-400% improved accuracy over existing methods.

Deep Cell Characterization

Nuanced cell type identification with confidence scores
Identification of metabolic, immunogenic and differentiation related cell state
Identification of novel or ambiguous cell populations
Quality metrics for annotation reliability

Disease Impact Analysis

How disease states affect cellular populations
Altered pathways and gene programs in disease
Cell type specific changes between conditions
Functional implications of cellular shifts

Biological Contextualization

Relevant citations supporting cell type assignments
Connection to established cell ontologies
Critical pathway identification
Marker genes with expression specificity metrics

Actionable Insights

Potential therapeutic targets by cell type
Biomarkers for cell population identification
Cell surface proteins for therapeutic targeting
Key transcription factors driving cell states

Powered by CyteType

Single-cell datasets in biopharma now routinely contain millions of cells across complex disease models. Yet annotation remains constrained by static reference atlases and marker-based approaches that fail to capture disease-relevant biology, creating critical bottlenecks:

Building in-house datasets?

CyteType is available as a standalone annotation tool with full pipeline integration.

Interactive reports that unlock deeper biology

Nygen Intel provides interactive HTML reports, serving as an exploratory workspace with annotations, evidence, and confidence scores for each cluster.

Chat with the LLM and query your annotated scRNA-Seq clusters

Query at the Cluster Level

Nygen Intel reports access our annotator agent allowing users to query the report at the cluster level. Users can chat at the cluster level to ask:

Why a specific cell type was assigned
What markers drove the decision
How it relates to known ontologies and reference populations
Run re-annotations on entire cluster

Your next step

Nygen Intel makes it accessible.

Scoping Call

(30 - minutes)
Define therapeutic areas, research questions, and dataset requirements.

Proposal & Quote

Receive detailed scoping statement with deliverables and pricing

Report Delivery

(Timeline per scope)
Access your data as static PDFs and AI-enabled interactive reports*
*Host locally or on our secure servers based on your IT and compliance requirements