GitHub Open ScarfWeb

Platform Overview

How ScarfWeb is organised: projects, datasets, the explore page, and where core analysis actions live.

Supported Data Types

Supported Modalities

  • Single-cell RNA Sequencing (scRNA-seq) analysis

  • CITE-seq for surface protein quantification

  • Spatial transcriptomics visualization

  • BCR/TCR sequencing with clonotype analysis

Technology Compatibility

The platform is technology-agnostic, supporting data from multiple commercial droplet and plate-based methods.

Core Platform Features

Data Management

  • Advanced dataset merging and subsetting capabilities

  • Comprehensive metadata integration

  • Flexible data organization system

  • Version tracking and management

Infrastructure and Security

  • Deployment across 20 AWS global regions

  • Strict data residency enforcement

  • ISO 27001 and SOC 2 Type II Ready infrastructure

  • GDPR-compliant data handling

    • Processing of count matrices only
    • No raw sequencing data storage

Cloud Implementation

  • Browser-based interface

  • No local installation required

  • User-selected server location

  • Scalable computation resources, all analysis executed immediately and no job queuing

  • Real-time collaboration capabilities