Menu
Getting Started
Prerequisites
Projects
Navigating Explore Page
Sharing Dataset Directly
Tracking progress
Differential Gene Expression
Supported file formats
Platform Overview
Filtering Cells
Creating Public Links
Adjusting UMAPs
Compositional Analysis
Marker Interpretation
Count Matrix Upload Process
HVG selection
Cell Selections and Custom Categories
Pseudotime Analysis
Transferring Dataset
Metadata and existing analysis Import
Additional Analysis Parameters
Publishing on Nygen Database
Autoannotation
Gene sets and signature scores
Importing Spatial and Clonotype Data
Analysis Version Control
Visualization tools
Merging and Demultiplexing Datasets
Data Integration and Batch Correction
Data Management
Prerequisites
Projects
Navigating Explore Page
Sharing Dataset Directly
Tracking progress
Differential Gene Expression
Supported file formats
Platform Overview
Filtering Cells
Creating Public Links
Adjusting UMAPs
Compositional Analysis
Marker Interpretation
Count Matrix Upload Process
HVG selection
Cell Selections and Custom Categories
Pseudotime Analysis
Transferring Dataset
Metadata and existing analysis Import
Additional Analysis Parameters
Publishing on Nygen Database
Autoannotation
Gene sets and signature scores
Importing Spatial and Clonotype Data
Analysis Version Control
Visualization tools
Merging and Demultiplexing Datasets
Data Integration and Batch Correction
Analysis Pipeline
Prerequisites
Projects
Navigating Explore Page
Sharing Dataset Directly
Tracking progress
Differential Gene Expression
Supported file formats
Platform Overview
Filtering Cells
Creating Public Links
Adjusting UMAPs
Compositional Analysis
Marker Interpretation
Count Matrix Upload Process
HVG selection
Cell Selections and Custom Categories
Pseudotime Analysis
Transferring Dataset
Metadata and existing analysis Import
Additional Analysis Parameters
Publishing on Nygen Database
Autoannotation
Gene sets and signature scores
Importing Spatial and Clonotype Data
Analysis Version Control
Visualization tools
Merging and Demultiplexing Datasets
Data Integration and Batch Correction
Visual Exploration
Prerequisites
Projects
Navigating Explore Page
Sharing Dataset Directly
Tracking progress
Differential Gene Expression
Supported file formats
Platform Overview
Filtering Cells
Creating Public Links
Adjusting UMAPs
Compositional Analysis
Marker Interpretation
Count Matrix Upload Process
HVG selection
Cell Selections and Custom Categories
Pseudotime Analysis
Transferring Dataset
Metadata and existing analysis Import
Additional Analysis Parameters
Publishing on Nygen Database
Autoannotation
Gene sets and signature scores
Importing Spatial and Clonotype Data
Analysis Version Control
Visualization tools
Merging and Demultiplexing Datasets
Data Integration and Batch Correction
Interactive Analysis
Prerequisites
Projects
Navigating Explore Page
Sharing Dataset Directly
Tracking progress
Differential Gene Expression
Supported file formats
Platform Overview
Filtering Cells
Creating Public Links
Adjusting UMAPs
Compositional Analysis
Marker Interpretation
Count Matrix Upload Process
HVG selection
Cell Selections and Custom Categories
Pseudotime Analysis
Transferring Dataset
Metadata and existing analysis Import
Additional Analysis Parameters
Publishing on Nygen Database
Autoannotation
Gene sets and signature scores
Importing Spatial and Clonotype Data
Analysis Version Control
Visualization tools
Merging and Demultiplexing Datasets
Data Integration and Batch Correction
Collaboration
Prerequisites
Projects
Navigating Explore Page
Sharing Dataset Directly
Tracking progress
Differential Gene Expression
Supported file formats
Platform Overview
Filtering Cells
Creating Public Links
Adjusting UMAPs
Compositional Analysis
Marker Interpretation
Count Matrix Upload Process
HVG selection
Cell Selections and Custom Categories
Pseudotime Analysis
Transferring Dataset
Metadata and existing analysis Import
Additional Analysis Parameters
Publishing on Nygen Database
Autoannotation
Gene sets and signature scores
Importing Spatial and Clonotype Data
Analysis Version Control
Visualization tools
Merging and Demultiplexing Datasets
Data Integration and Batch Correction
Miscellanous
Prerequisites
Projects
Navigating Explore Page
Sharing Dataset Directly
Tracking progress
Differential Gene Expression
Supported file formats
Platform Overview
Filtering Cells
Creating Public Links
Adjusting UMAPs
Compositional Analysis
Marker Interpretation
Count Matrix Upload Process
HVG selection
Cell Selections and Custom Categories
Pseudotime Analysis
Transferring Dataset
Metadata and existing analysis Import
Additional Analysis Parameters
Publishing on Nygen Database
Autoannotation
Gene sets and signature scores
Importing Spatial and Clonotype Data
Analysis Version Control
Visualization tools
Merging and Demultiplexing Datasets
Data Integration and Batch Correction

Categories

Find guides, tutorials, and troubleshooting tips to help you make the most of Nygen’s analytics platform. Whether you're getting started or exploring advanced features, we're here to support you.

Getting Started

Learn how to kick-start your single-cell journey on Nygen Analytics

Data Management

How to manage your data on Nygen Analytics

Analysis Pipeline

Learn about filtering, HVG selection, analysis setup, version control, and data integration.

Visual Exploration

Learn to navigate data visuals, adjust UMAPs, create custom categories, use autoannotation, and explore advanced visualization tools.

Interactive Analysis

Dive into advanced tools for analyzing data, including differential gene expression, compositional analysis, pseudotime, and gene sets with signature scores.

Collaboration

How to manage your projects and share your results in the most effective way.

Miscellanous

Find helpful resources on diverse topics, including tracking analysis progress and interpreting markers for deeper understanding.
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