GitHub View CyteType

Audit-ready export

Export CyteType annotation tables for downstream analysis and regulatory documentation.

What it is

A full annotation table exportable as CSV/TSV, containing all fields needed for downstream analysis and regulatory documentation.

Exported columns

cluster ID, CL term name, CL term ID, cell type, granular annotation, cell state, confidence score, label match score, supporting markers, conflicting markers.

When to use it

Use the export for integration into adata.obs or obj@meta.data, consortium data submissions, and clinical/regulatory sign-off packages.

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Ontology-anchored annotation

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