What it is
Each cluster is assigned a Cell Ontology (CL) term, a globally standardized identifier for cell types, alongside a confidence score and a label match score comparing the CyteType call to any labels you already had.
How to read it
The CL ID links to the official ontology definition. Confidence (0–1) reflects model certainty. Label match shows alignment with your prior annotation if you provided cluster labels.
When to act
Low confidence (<0.6) or low label match when you trust your prior labels suggests the cluster may need manual review or re-clustering.
Learn more
