Resources

A curated index of articles, updates, events, and published work across single-cell research.

What We Got Wrong About AI Agents for Cell Annotation

What We Got Wrong About AI Agents for Cell Annotation

Running CyteType's AI agents across thousands of single-cell RNA-seq datasets in production exposed run-to-run variance, selective evidence gathering, and inconsistent depth. We rebuilt cell type annotation as a deterministic LLM workflow for reproducible, auditable results in drug discovery pipelines.

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Startups & Single Cells: A Fireside Chat on CyteType - a Multi-Agent AI for Robust Cell Annotation
15:00 CET Online

Startups & Single Cells: A Fireside Chat on CyteType - a Multi-Agent AI for Robust Cell Annotation

Fireside chat with Parashar Dhapola on building Nygen and how CyteType uses multi-agent AI for evidence-grounded cell annotation. Hosted by BIOTECH XYZ.

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CyteType: Evidence-Based Cell Annotation with Multi-Agent AI

CyteType: Evidence-Based Cell Annotation with Multi-Agent AI

CyteType uses a five-agent AI framework for accurate cell type annotation in scRNA-seq data. Outperforms reference-based methods by 300%+ in benchmarking.

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CyteType: Multi-Agent AI Transforming Single-Cell Annotation
16:00 CET Online

CyteType: Multi-Agent AI Transforming Single-Cell Annotation

Explore why LLMs alone fail at cell annotation and how CyteType fixed it.

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Why We Built AI Agents That Actually Understand Single Cell Data

Why We Built AI Agents That Actually Understand Single Cell Data

CyteType is multi-agentic annotation system designed for single-cell RNA-seq cluster annotation. Designed to deploy three specialized AI agents to provide accurate cell type identification, literature validation, and pathway-level reasoning beyond traditional marker-based methods and beyond. Built for researchers seeking precise, evidence-backed single-cell data analysis with comprehensive biological context.

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Multi-agent AI enables evidence-based cell annotation in single-cell transcriptomics

Multi-agent AI enables evidence-based cell annotation in single-cell transcriptomics

Gautam Ahuja et al. demonstrate how multi-agent AI systems enable evidence-based cell annotation in scRNA-seq data.

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