SCOP King's College x Nygen: Single-Cell Analysis Course
Hands-on single-cell data analysis course at King's College London.
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A curated index of articles, updates, events, and published work across single-cell research.
Why We Built AI Agents That Actually Understand Single Cell Data
The original 2025 announcement of CyteType for single-cell RNA-seq cluster annotation. CyteType has since been rebuilt as a structured AI workflow for accurate cell type identification, literature validation, and pathway-level reasoning beyond traditional marker-based methods. Built for researchers seeking precise, evidence-backed single-cell data analysis with comprehensive biological context.
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King's College London SCOP Partnership with Nygen
An year-old facility is quietly revolutionizing how core services support cutting-edge research. Through a partnership built on scientific curiosity and shared problem-solving,
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Max Planck x Nygen: Accelerated Single-Cell Analysis Course
Accelerated single-cell data analysis course with Max-Planck-Institut.
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Porto's Bioinformatics Core Democratizing Single-Cell Analysis
Discover how Porto's i3S bioinformatics core facility is democratizing single-cell analysis for researchers across cancer, neurobiology, and infectious disease studies.
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i3S Porto x Nygen - Accelerated Single Cell Data Analysis Course
Hands-on single-cell RNA-Seq and multi-omics analysis course at i3S Porto.
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HVG selection
Learn how to select Highly Variable Genes (HVGs) in single-cell data, set corrected variance thresholds, and use custom blocklists to refine your analysis while ensuring meaningful cell heterogeneity.
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Scotland's Nimble Single-Cell Sequencing Facility
Meet Aleksandra Wcislo, the sole operator of BBSRC's Single Cell Sequencing Platform at St Andrews. Discover how one scientist manages everything from bat genomes to placental cells, proving that excellence in genomics doesn't require a large team.
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IGBMC x Nygen - Accelerated Single Cell Data Analysis Course
Accelerated single-cell data analysis course with IGBMC.
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Integrating Spatial Transcriptomics with Single-cell RNA-seq
How to integrate spatial transcriptomics with scRNA-seq: when spatial context helps, the key integration methods, and worked tissue examples.
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Spatial Transcriptomics and scRNA-seq: A Complementary Pair
The current state of spatial transcriptomics and scRNA-seq: single-cell-resolution platforms, foundation models for integration, spatial multi-omics, and 3D tissue atlases.
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UCM Madrid x Nygen - Accelerated Single Cell Data Analysis Course
Accelerated single-cell data analysis course with UCM Madrid.
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Spain's Hidden Genomics Powerhouse at UMH INOMICS
In sunny Alicante, two specialists have built an impressive Omics Core Facility that rivals larger institutions. We sat down with Antonio and José to understand their science, approach to experiment design and collaborative methods drives breakthrough research with a lean, efficient operation.
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Nygen Secures ISO 27001 and SOC 2 Certifications
Nygen Analytics, the only single-cell–focused omics data-analytics platform to pair ISO 27001 certification and SOC 2 compliance with full GDPR alignment
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When is Single-cell RNA-seq Enough, and When Do You Need Spatial Data?
When is scRNA-seq enough on its own? A guide to its use cases, the workflow from clustering to cell type annotation, and when to add spatial data.
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